Mihaljevic, Ante; Rubin, Philip D; Chouvardas, Panagiotis; Esposito, Roberta; Cell type specific long non-coding RNA targets identified by integrative analysis of single-cell and bulk colorectal cancer transcriptomes, Scientific Reports,14,1,10939, 2024.
Hanhart, Daniel; Gossi, Federico; Rapsomaniki, Maria Anna; Kruithof-de Julio, Marianna; Chouvardas, Panagiotis; scLinear predicts protein abundance at single-cell resolution, Communications Biology, 7, Article number: 267, 2024.
Dhaka, Bhavya; Zimmerli, Marc; Hanhart, Daniel; Moser, Mario; Guillen-Ramirez, Hugo; Mishra, Sanat; Esposito, Roberta; Polidori, Taisia; Widmer, Maro; García-Pérez, Raquel; Kruithof-de Julio, Marianna; Pervouchine, Dmitri; Melé, Marta; Chouvardas, Panagiotis & Johnson, Rory, Functional identification of cis-regulatory long noncoding RNAs at controlled false-discovery rates, Nucleic Acids Research, gkae075, 2024.
Plaisance, Isabelle; Chouvardas, Panagiotis; Sun, Yuliangzi; Nemir, Mohamed; Aghagolzadeh, Parisa; Aminfar, Farhang; Shen, Sophie; Shim, Woo Jun; Rochais, Francesca; Johnson, Rory; A transposable element into the human long noncoding RNA CARMEN is a switch for cardiac precursor cell specification, Cardiovascular research, 119, 6, 2023.
Botos, Marius Alexandru; Arora, Prateek; Chouvardas, Panagiotis; Mercader, Nadia; Transcriptomic data meta-analysis reveals common and injury model specific gene expression changes in the regenerating zebrafish heart, Scientific Reports, 13, 1, 2023.
Minoli, Martina; Cantore, Thomas; Hanhart, Daniel; Kiener, Mirjam; Fedrizzi, Tarcisio; La Manna, Federico; Karkampouna, Sofia; Chouvardas, Panagiotis; Genitsch, Vera; Rodriguez-Calero, Antonio; Bladder cancer organoids as a functional system to model different disease stages and therapy response, Nature Communications, 14, 1, 2023.
Papadopoulou, Dimitra; Roumelioti, Fani; Tzaferis, Christos; Chouvardas, Panagiotis; Pedersen, Anna-Kathrine; Charalampous, Filippos; Christodoulou-Vafeiadou, Eleni; Ntari, Lydia; Karagianni, Niki; Denis, Maria C; Repurposing the antipsychotic drug amisulpride for targeting synovial fibroblast activation in arthritis, JCI insight, 8, 9, 2023.
Gossi, Federico; Pati, Pushpak; Chouvardas, Panagiotis; Martinelli, Adriano Luca; Kruithof-de Julio, Marianna; Rapsomaniki, Maria Anna; Matching single cells across modalities with contrastive learning and optimal transport, Briefings in bioinformatics, 24, 3, 2023.
La Manna, Federico; Hanhart, Daniel; Kloen, Peter; van Wijnen, Andre J; Thalmann, George N; Kruithof-de Julio, Marianna; Chouvardas, Panagiotis; Molecular profiling of osteoprogenitor cells reveals FOS as a master regulator of bone non-union, Gene, 874, 2023.
Aghagolzadeh, Parisa; Plaisance, Isabelle; Bernasconi, Riccardo; Treibel, Thomas A; Pulido Quetglas, Carlos; Wyss, Tania; Wigger, Leonore; Nemir, Mohamed; Sarre, Alexandre; Chouvardas, Panagiotis; Assessment of the Cardiac Noncoding Transcriptome by Single-Cell RNA Sequencing Identifies FIXER, a Conserved Profibrogenic Long Noncoding RNA, Circulation, 148, 9, 2023.
My Bibliography - NCBI
